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Cell Designer

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Cell Designer
Sarah Killcoyne
Description
• Molecular pathway
creator/editor/simulator tool (not a
generic network tool)
• Uses SBW for simulations
• Imports/exports via SBML
• Last updated January 2007
• Language: Java
Plugin Architecture
Will be supported in v4.0 (in alpha now)
• Inherits from a set of classes that allow:
– Adding menus to popups
– Receiving events such as:
• Objects added/modified/deleted on the model
• Models added/modified/deleted
• Parameters on objects added/modified/deleted
Features
• Variety of layouts (most shared by
Cytoscape)
• Access to public databases such as
Entrez, iHOP, etc
• Connection to outside tools (SBW)
• Simulations that allow a user to watch
data changing the pathway
Auteur
Документ
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